When I want to drop tools in the wooden box, swiping down almost always targets the floor or tile instead of the box, however it was working properly when the wooden box was placed on an ordinary biome. I tried several times to store a tool in my hand to the wooden box with tools, what happened was, when I swiped down, the green highlight almost always targets the floor and not the box making the tools in my hand and the box switch instead of the tool in my box being stored in the wooden box.
Most probably the issue is the decision weather the floor or the wooden box target will be hit when a swipe down motion is made on the tile.